NanoComp report

Summary statistics

feature
General summary ONTRapid ONTLIG ONTLIGnoFrag PacBioRSII PacBioCLR PacBioHiFi
Mean read length 9,231.4 11,597.7 10,410.0 17,529.9 18,904.2 12,924.1
Mean read quality 10.0 9.6 7.2 5.3 0.0 31.1
Median read length 4,253.5 5,935.0 1,661.0 17,759.0 13,942.0 12,883.0
Median read quality 10.2 9.9 7.2 6.1 0.0 30.7
Number of reads 31,032.0 1,370,414.0 97,301.0 163,478.0 3,383,930.0 1,789,131.0
Read length N50 20,333.0 21,673.0 46,854.0 24,418.0 33,061.0 12,949.0
Total bases 286,467,413.0 15,893,590,553.0 1,012,898,671.0 2,865,756,312.0 63,970,329,624.0 23,122,913,014.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 31032 (100.0%) 286.5Mb 1370414 (100.0%) 15893.6Mb 97301 (100.0%) 1012.9Mb 117926 (72.1%) 2637.3Mb 0 (0.0%) 0.0Mb 1789131 (100.0%) 23122.9Mb
>Q7 31032 (100.0%) 286.5Mb 1308003 (95.4%) 15220.6Mb 60867 (62.6%) 688.1Mb 32013 (19.6%) 685.2Mb 0 (0.0%) 0.0Mb 1789131 (100.0%) 23122.9Mb
>Q10 17914 (57.7%) 185.8Mb 624560 (45.6%) 7246.5Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 1789131 (100.0%) 23122.9Mb
>Q12 154 (0.5%) 1.0Mb 531 (0.0%) 1.5Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 1789131 (100.0%) 23122.9Mb
>Q15 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 1789131 (100.0%) 23122.9Mb
Top 5 highest mean basecall quality scores and their read lengths
1 13.2 (808) 13.7 (251) 9.7 (290) 9.4 (8774) -0.0 (4410) 93.0 (1427)
2 13.1 (198) 13.6 (201) 9.3 (378) 9.3 (13660) -0.0 (24066) 93.0 (1700)
3 12.9 (291) 13.4 (225) 9.3 (226) 9.3 (8079) -0.0 (20326) 93.0 (1674)
4 12.8 (6465) 13.0 (213) 9.2 (484) 9.3 (13378) -0.0 (28238) 93.0 (90)
5 12.8 (1413) 13.0 (135) 9.2 (1207) 9.3 (9974) -0.0 (12767) 93.0 (4193)
Top 5 longest reads and their mean basecall quality score
1 206567 (11.3) 211292 (6.9) 471734 (7.4) 59304 (6.0) 151906 (-0.0) 26294 (32.7)
2 205035 (10.0) 203278 (10.6) 292728 (7.0) 57233 (5.9) 141984 (-0.0) 24594 (23.2)
3 193875 (10.8) 202734 (7.4) 261182 (7.2) 56444 (5.3) 134001 (-0.0) 23388 (23.9)
4 181100 (10.2) 200413 (7.0) 258153 (6.9) 56194 (5.0) 127292 (-0.0) 23092 (24.9)
5 177906 (10.9) 189824 (6.6) 255887 (7.0) 55125 (7.3) 122904 (-0.0) 22172 (24.9)




Plots

Comparing number of reads





Comparing throughput in gigabases





Comparing read length N50





Comparing read length





Comparing log-transformed read length





Comparing average base call quality score





Histogram of read lengths





Normalized histogram of read lengths





Histogram of log transformed read lengths





Normalized histogram of log transformed read lengths